Basic Information
VIS ID
TVIS44031927
Fusion event
HTLV-1-PARP4 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q12.12
Reference genome
NCBI36/hg18
Start
23952921/24480783 (Hg38)
End
23952921/24480783 (Hg38)
Orient
-
Location type
Intronic
Target gene
PARP4
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-877-3p ; hsa-mir-1260b ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-2276/Upstream/318279; hsa-mir-1267/Downstream/15183251;
Nearest TSS
ENST00000623511/Upstream/21301; ENST00000218548/Downstream/32027;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/139821, chr13-CpG: 62/Downstream/31601
Upstream sequence
ccagagcaaggccccaactctgttcaattctatgaaggctcagagaggtgaggaaactgcagaaagaaggcctgaagctagcagaggttggctgaggttt
Downstream sequence
aaggaaagaagccatctctataacgtaacaatggaagatgaaccagccagtgctgatgtagaagctgcagcaagttctccagaagatctagctaagatca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate