Basic Information
VIS ID
TVIS44031930
Fusion event
HTLV-1-LINC00393 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q22.1
Reference genome
NCBI36/hg18
Start
73140903/73668765 (Hg38)
End
73140903/73668765 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13E
Target gene
LINC00393
Nearest miRNA
hsa-mir-1297/Upstream/7450441; hsa-mir-1267/Downstream/4029247;
Nearest TSS
ENST00000623511/Upstream/20512; ENST00000419499/Downstream/326284;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/608533, chr13-CpG: 31/Downstream/465207
Upstream sequence
CAAATAGCAAGAAAAGTTGAAATGCTGGGCAGCAAAAAACATGAAAAATATCCATTGCAGCTTCTAAAATTGTACTTTTAGGCAGCTTtgtgctggtaaa
Downstream sequence
cacttaacaattggcactccagaagaaagaagcattgatgtgtagcatttgccaatttctggggtgaaaatactcctaccgtggctaatttcaagctacc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate