Basic Information
VIS ID
TVIS44031937
Fusion event
HTLV-1-LOC105370467 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
NCBI36/hg18
Start
40338431/40799476 (Hg38)
End
40338431/40799476 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370467
Nearest miRNA
hsa-mir-208a/Upstream/3847085; hsa-mir-1185-1/Downstream/6961519;
Nearest TSS
ENST00000550708/Upstream/411918; ENST00000515218/Downstream/155422;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1366474, chr14-CpG: 47/Downstream/807179
Upstream sequence
TATAATTATGTACCTATCAACTGGTTCATGCACTTGGAAATATACAAATTAATTCAATTTCTGTTTAACTTTAATAAAACTAAATTATGATATACATAGG
Downstream sequence
CACACATAAATTTTTGTTATGATTTGCAATTTGTAAAATAATATCTACAATCACTATTATTTTCCAAATGTCATCTTTTAAGTAAAATCTAACACAACTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate