VISDB Viral Integration Site DataBase

VIS ID

TVIS44031942

Fusion event

HTLV-1-MTA3 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr2

Cytoband

p21

Reference genome

Start

End

42652378/42571734 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-296-3p ; hsa-mir-495-3p ; hsa-mir-204-5p ; hsa-mir-211-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6832-3p ; hsa-mir-153-5p ; hsa-mir-4687-5p ; hsa-mir-4422 ; hsa-mir-330-3p ; hsa-mir-4278 ; hsa-mir-6789-5p ; hsa-mir-6824-5p ; hsa-mir-4294 ; hsa-mir-6758-3p ; hsa-mir-4528 ; hsa-mir-6782-5p ; hsa-mir-6873-3p ; hsa-mir-7110-3p ; hsa-mir-6817-3p ; hsa-mir-4639-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-6845-3p ; hsa-mir-337-3p ; hsa-mir-4789-5p ; hsa-mir-1284 ; hsa-mir-570-3p ; hsa-mir-5001-3p ; hsa-mir-6722-5p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-652-3p ; hsa-mir-216a-5p ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-875-3p ; hsa-mir-4446-5p ; hsa-mir-4755-5p ; hsa-mir-5006-3p ; hsa-mir-642a-5p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-1224-3p ; hsa-mir-141-5p ; hsa-mir-3152-5p ; hsa-mir-6809-3p ; hsa-mir-6836-3p ; hsa-mir-4753-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-8062 ; hsa-mir-1273f ; hsa-mir-129-5p ; hsa-mir-143-3p ; hsa-mir-4670-3p ; hsa-mir-4708-5p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-8055

Nearest miRNA

hsa-mir-1301/Upstream/7100248; hsa-mir-10b/Downstream/4805941;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/2644, chr2-CpG: 87/Downstream/220791

Upstream sequence

CTAGGGAACATAATATTGAAAGGAATTGGCTgggcgggtgcggtggctcacgcctgtaatcccagcactttgggaggtcgaggcgggcggatcacctgag

Downstream sequence

gttgggagtttgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagctgagtgtgttggtgcatgcctgtaatcccagc