Basic Information
VIS ID
TVIS44031947
Fusion event
HTLV-1-ABCA13 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
p12.3
Reference genome
NCBI36/hg18
Start
48382972/48372829 (Hg38)
End
48382972/48372829 (Hg38)
Orient
-
Location type
Intronic
Target gene
ABCA13
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1183/Upstream/3491029; hsa-mir-10399/Downstream/8582956;
Nearest TSS
ENST00000635602/Upstream/59762; ENST00000435451/Downstream/3613;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/282465, chr7-CpG: 37/Downstream/81935
Upstream sequence
TCTGCAGATTCTGGAAAATAAGCAACATTCTTAAGGAAGCATATAACTTTATTTTCTCTTTCATGCACAGAAAAAAGCTAGATTTCTAAAGCAATTTTAG
Downstream sequence
AAGTAAAAAATAAGCATTTTTTCTTGAAACATTATGAATTACATCACATTAAGTGGAAAAATCTCTCTGTTAGCAATGTCAGAGTCACTCATCCATTTAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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