Basic Information
VIS ID
TVIS44031948
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p13.1
Reference genome
NCBI36/hg18
Start
115870813/115526669 (Hg38)
End
115870813/115526669 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-101-1/Upstream/2644540; hsa-mir-1182/Downstream/1033355;
Nearest TSS
ENST00000473358/Upstream/188433; ENST00000478369/Downstream/115284;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/187958, chr1-CpG: 88/Downstream/115425
Upstream sequence
ctctctctctctctctctctctctctctctctatctatctatcatctatctatctatctatctatctatctatctatctatctatcatctatctatctat
Downstream sequence
ctattatctagatatcctgttggttctgtttctctggagaatgctgattcacacaAAAGGAAAAAGAATCATTTAAAAAAATATTACAGCAGCCACCAAC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate