Basic Information
VIS ID
TVIS44031965
Fusion event
HTLV-1-GSAP integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q11.23
Reference genome
NCBI36/hg18
Start
76850103/77382850 (Hg38)
End
76850103/77382850 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7J
Target gene
GSAP
Nearest miRNA
hsa-mir-10525/Upstream/1467581; hsa-mir-10399/Downstream/14821165;
Nearest TSS
ENST00000635602/Upstream/27220; ENST00000608884/Downstream/23255;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/260773, chr7-CpG: 111/Downstream/32673
Upstream sequence
GAATCACAGAAGAGTTTAGGGGAATCACCTGCACACACACATTGCAGGTCAAAGCAAGCAAGAAAACAGAACACTTTCAGAACCTCAGTTTTCCAGAGGG
Downstream sequence
GAATTGATCTCAAATACAACACTATCTTCACTTATTTTAACAGTAAGGCTTCTggctgggcacagtggctcacacctgtatccccagcactttgggaagc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate