Basic Information
VIS ID
TVIS44031972
Fusion event
HTLV-1-MOV10L1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr22
Cytoband
q13.33
Reference genome
NCBI36/hg18
Start
48874426/50093870 (Hg38)
End
48874426/50093870 (Hg38)
Orient
+
Location type
Intronic
Target gene
MOV10L1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-500a-5p
Nearest miRNA
hsa-let-7a-3/Upstream/130931; hsa-mir-12114/Downstream/313572;
Nearest TSS
ENST00000624155/Upstream/3614; ENST00000434497/Downstream/20588;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/2501, chr22-CpG: 49/Downstream/72116
Upstream sequence
aaagtgttgggattacaggcatgagccaccatgcctggccTGTTTGTTGATATTTAAATATTTGACCTGCCTGGAATTTATTTGGGTGCACAGACTGAGA
Downstream sequence
GAAGGAACCAGACATTGCTTTCCTAATGGCTAGCCAGTCATCTGAGTAGCTCACTTTTTCCCTGCTGATTTGGAAAATTCCTTAATCATGTATCAGAATC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate