Basic Information
VIS ID
TVIS44031975
Fusion event
HTLV-1-LOC100419170 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q31.3
Reference genome
NCBI36/hg18
Start
154802009/153661407 (Hg38)
End
154802009/153661407 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100419170
Nearest miRNA
hsa-mir-12113/Upstream/1124891; hsa-mir-1305/Downstream/5467395;
Nearest TSS
ENST00000502981/Upstream/29043; ENST00000645889/Downstream/22663;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/193944, chr4-CpG: 95/Downstream/22527
Upstream sequence
ATACTATATTGTAGTATTATGCAATAAATAAATGAAAAATTCCAATGAAGAGTTCTTGCTATGTCACAGGTCAGGgatgatgatgatgaagatgatgatg
Downstream sequence
atgatgatgatgatggtgatgatACTagctaacaatgattgaattctttctttgtgtcaagcattctgttaagcacattatatgcataacctcatttaaA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate