Basic Information
VIS ID
TVIS44031983
Fusion event
HTLV-1-ANKRD54 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr22
Cytoband
q13.1
Reference genome
NCBI36/hg18
Start
36568951/37842998 (Hg38)
End
36568951/37842998 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
ANKRD54
miRNAs that regulate target gene
hsa-mir-484
Nearest miRNA
hsa-mir-1286/Upstream/1556091; hsa-let-7a-3/Downstream/1274;
Nearest TSS
ENST00000624155/Upstream/2764; ENST00000414316/Downstream/884;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/17386, chr22-CpG: 79/Downstream/787
Upstream sequence
gctgacccggattctaataccagcaacagccacttgctatgtgacctggaataagacaatttctctgagcctcagtttcctcttcagtaaagtgggaaca
Downstream sequence
atttctatgtctcaaagagttcttgtgaggacagatgatcatgtatcagcagtgtttggggcacagcaaaggcAGCATAACAGCTAAACATCCattacct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate