Basic Information
VIS ID
TVIS44031996
Fusion event
HTLV-1-PACC1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q32.3
Reference genome
NCBI36/hg18
Start
210639536/212399571 (Hg38)
End
210639536/212399571 (Hg38)
Orient
-
Location type
Intronic
Target gene
PACC1
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/321886; hsa-mir-1182/Downstream/7718282;
Nearest TSS
ENST00000473358/Upstream/21865; ENST00000472389/Downstream/10593;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/113219, chr1-CpG: 77/Downstream/14678
Upstream sequence
ttttttaagagacacggtctcactctgtcactcaggctggagtgcgctggtgtgatcatagctcactgcagccttgaactcctggactcaagtggggtct
Downstream sequence
cactctgtcactcaggctggagcgcagtggcatgatttttggctcactgcaacctccacctcccaggctcaatcaatcctcccatctcagcctcctgagt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate