Basic Information
VIS ID
TVIS44031998
Fusion event
HTLV-1-NTNG1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
NCBI36/hg18
Start
107677851/107333706 (Hg38)
End
107677851/107333706 (Hg38)
Orient
-
Location type
Intronic
Target gene
NTNG1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-129-5p ; hsa-mir-2054 ; hsa-mir-3613-5p ; hsa-mir-6885-3p
Nearest miRNA
hsa-mir-101-1/Upstream/7052398; hsa-mir-11399/Downstream/563517;
Nearest TSS
ENST00000473358/Upstream/72903; ENST00000438318/Downstream/339943;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/191865, chr1-CpG: 22/Downstream/146904
Upstream sequence
GTAAGATTGAAGGAAATACATGAAAACATCgtgtgtgtgtgcatgtgtgtgtttgtgtgtgtgtgtgtgtTTAAACTATTTGCAGTGCTAAAAACAGATT
Downstream sequence
GATTTTTCAAAGCAAGTTCCAACTTTAGTTATCATCCTTCCTATATTACTGCTACTTTGGGTGAAAAAGTGAGACTGTCGTAGAGAAAGACTAACCTCAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate