Basic Information
VIS ID
TVIS44032006
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
NCBI36/hg18
Start
221347264/223107299 (Hg38)
End
221347264/223107299 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-101-1/Upstream/2906680; hsa-mir-1182/Downstream/1149741;
Nearest TSS
ENST00000473358/Upstream/178858; ENST00000435108/Downstream/25280;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/25600, chr1-CpG: 57/Downstream/35544
Nearby gene
LOC107985323(-3966) ; TLR5(+1102) ;
Upstream sequence
AACTAACAGTGGCTAGGATGTAGACATGAACAGGTCCCCCATACACTCTATACAGAGACCACAAAAGATGCCTTTTAAATGTGTTTCATTAGGAAAATTA
Downstream sequence
CCTGTAATTCGTGTTTTTAAATAAGAAGATTAGAAAAGGCTGTGGGATAGACTCCTTTCCTATGTTGAGAGTTATCTGTGTTTCAGCTTGTTCTTCCTGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate