Basic Information
VIS ID
TVIS44032034
Fusion event
HTLV-1-LOC102723803 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
NCBI36/hg18
Start
1469086/1479086 (Hg38)
End
1469086/1479086 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102723803
Nearest miRNA
hsa-mir-1302-9/Upstream/1448805; hsa-let-7a-1/Downstream/3371211;
Nearest TSS
ENST00000422679/Upstream/424462; ENST00000637134/Downstream/501204;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/426846, chr9-CpG: 266/Downstream/535745
Upstream sequence
gtcttgaatccattttgagttgatttttgtatgtagtgagagacaaggatccagtttcattcttgcgcacgtggctatccaattttcacagtaacactta
Downstream sequence
ttgaagaggttgtcctttctccaacttatgtttttgtgtgttttgtcaaagatcagttgattgttaagtattttgctttgtttctggattttctattttg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate