Basic Information
VIS ID
TVIS44032036
Fusion event
HTLV-1-LOC105369689 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
p12.1
Reference genome
NCBI36/hg18
Start
21822605/21778404 (Hg38)
End
21822605/21778404 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369689
Nearest miRNA
hsa-mir-1244-3/Upstream/4105010; hsa-let-7i/Downstream/2434017;
Nearest TSS
ENST00000382841/Upstream/2823; ENST00000539874/Downstream/48806;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/3347, chr12-CpG: 90/Downstream/162616
Upstream sequence
ACATTTAAATTTGCCTCTGGCTGAGAAATTGGCAAAAAAAAATCAATTAATTTTCAAGAGCACATTTACTACTTAGGGCTTATTTTATTCATCTGCTTAT
Downstream sequence
TCAATCACTATATGCTGTTGTCCACTAAAAGTTAGGTATATTTTCTTAACTGTTCAATAATTTTCTTAATTGTTCTTTCAGGAGTGAAGACTAATTTGCA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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