Basic Information
VIS ID
TVIS44032049
Fusion event
HTLV-1-ELF1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
NCBI36/hg18
Start
40500688/41028552 (Hg38)
End
40500688/41028552 (Hg38)
Orient
-
Location type
Intronic
Target gene
ELF1
miRNAs that regulate target gene
hsa-mir-194-5p
Nearest miRNA
hsa-mir-2276/Upstream/217691; hsa-mir-1267/Downstream/72467;
Nearest TSS
ENST00000623511/Upstream/9238; ENST00000379487/Downstream/32722;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/105882, chr13-CpG: 160/Downstream/31484
Upstream sequence
taaagaaccacgaccagctaaggcgtttgctgaaggcaaacagaatacagaatatgtagtacaagaaggcagtaatcaatgccagctataaccacctgac
Downstream sequence
cagttagggaaatgaggattttaactgtcatgactatattctccctattttgttcagaatacatttgtgtgtatatatacatagatataacaaagcaaat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate