Basic Information
VIS ID
TVIS44032054
Fusion event
HTLV-1-LINC01135 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p32.1
Reference genome
NCBI36/hg18
Start
59059488/58821228 (Hg38)
End
59059488/58821228 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
LINC01135
Nearest miRNA
hsa-mir-12136/Upstream/3595505; hsa-mir-101-1/Downstream/911999;
Nearest TSS
ENST00000473358/Upstream/7886; ENST00000424308/Downstream/30026;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/4665, chr1-CpG: 58/Downstream/82471
Upstream sequence
gcaccatttagataagaatgaactgggcagacaaaatatctcctctcttggagtttgcattctcctggtggagaaagacaataaataagtaaataataac
Downstream sequence
tatatcagttcagatagtaataaatattatgaagaaagatataaaaagacagagtaggggatgggcagatcattttacatggcgaagtcaagaaaggatc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate