Basic Information
VIS ID
TVIS44032069
Fusion event
HTLV-1-CA10 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr17
Cytoband
q21.33
Reference genome
NCBI36/hg18
Start
47436800/52004441 (Hg38)
End
47436800/52004441 (Hg38)
Orient
-
Location type
Intronic
Target gene
CA10
miRNAs that regulate target gene
hsa-mir-148b-3p
Nearest miRNA
hsa-mir-10226/Upstream/1235711; hsa-mir-1250/Downstream/4886829;
Nearest TSS
ENST00000595228/Upstream/255897; ENST00000572848/Downstream/153622;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/743219, chr17-CpG: 89/Downstream/153374
Upstream sequence
ACCCAAACCAAAAGACACAGAGAGAAGTACCTACCTATTTAGGAATCAGAACAACAAAATTACCCAGTTAATAAGAAAGTCAGCTGCATATTTCTAAAAT
Downstream sequence
AAGTATAACATCTTGCTCATTCCACCAAAACTGTAATTTATAACCAACACTGTGGAAAAGACACATGTATGTATTTTCTTAGAAGTTCACAGTAGAGATT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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