Basic Information
VIS ID
TVIS44032086
Fusion event
HTLV-1-LOC105372666 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr20
Cytoband
q13.2
Reference genome
NCBI36/hg18
Start
50561697/52511751 (Hg38)
End
50561697/52511751 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372666
Nearest miRNA
hsa-mir-103a-2/Upstream/1058774; hsa-mir-1-1/Downstream/1556657;
Nearest TSS
ENST00000382410/Upstream/11160; ENST00000428009/Downstream/109087;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/319465, chr20-CpG: 27/Downstream/461417
Upstream sequence
TTGGAAGTGCCCTGCTGTTCAGAGGACCTTCCCTATGCCTGCTAATACTTTAGGCTCATTAAGGGAGAAAATGTTGGCTGAAGGAgtggctcatgcctgg
Downstream sequence
aatcccagcactttgggaggccaaggtggaaggattgcttgagcccagtagttccagactagtcagggcaacatggcaagacctgtttccatgaaaatta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate