Basic Information
VIS ID
TVIS44032088
Fusion event
HTLV-1-TASP1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
NCBI36/hg18
Start
13267844/13339197 (Hg38)
End
13267844/13339197 (Hg38)
Orient
+
Location type
Intronic
Target gene
TASP1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-4503 ; hsa-mir-100-3p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/2689502; hsa-mir-1-1/Downstream/5131418;
Nearest TSS
ENST00000382410/Upstream/93828; ENST00000469177/Downstream/29506;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/39897, chr20-CpG: 43/Downstream/299441
Upstream sequence
ATCTGCTGAGTTTAGGACTGGCAGAGTTGAACACGAGGTCACATGGCCACAAATACATCCTGGAGCATATGCTGTGACTTGAATCCCATTGGCCTGGTAC
Downstream sequence
ACAGCAAAACTTCCCTTTGACACACCCAAGAGAAGAGTCTGGACTTTGCTCCCATTTCATGAACAATGTTTCACAGGCAAGCTTTCTTTTGATCTCCAGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate