Basic Information
VIS ID
TVIS44032092
Fusion event
HTLV-1-METTL21EP integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
NCBI36/hg18
Start
102336281/102885930 (Hg38)
End
102336281/102885930 (Hg38)
Orient
+
Location type
Intronic
Target gene
METTL21EP
Nearest miRNA
hsa-mir-1297/Upstream/839926; hsa-mir-1267/Downstream/4645241;
Nearest TSS
ENST00000623511/Upstream/11195; ENST00000607072/Downstream/2928;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/39517, chr13-CpG: 29/Downstream/3607130
Upstream sequence
aaatcatcagcattattttttacaactcactatggtatgctacgtgtttcatctttacatttccaaaactagaggcataaattgtatgagcttttagaga
Downstream sequence
gttctaatttgttttatgcactttttgttttttgcaaaattgactccatggaagtgcattttaataacactgaccttgtgtgtaagcattgtgcatatat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate