Basic Information
VIS ID
TVIS44032103
Fusion event
HTLV-1-RSPH9 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
NCBI36/hg18
Start
43724004/43648289 (Hg38)
End
43724004/43648289 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
RSPH9
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10398/Upstream/213669; hsa-mir-10524/Downstream/605917;
Nearest TSS
ENST00000381078/Upstream/3243; ENST00000512683/Downstream/39502;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2660, chr6-CpG: 31/Downstream/39245
Upstream sequence
acccaggaggtggagtttgcggtgagctgagatcgcaccattgcactccagcctgggcaacaagagcgaaactctgtctcaaaaaaaaaaaaaagaatac
Downstream sequence
aagatggggtactattttaaatagtttggtcagggatagcctctttgataaggtcacatttgagaagacacctgaagtgactgagagagtgagctatgta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate