Basic Information
VIS ID
TVIS44032129
Fusion event
HTLV-1-NEK11 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
NCBI36/hg18
Start
132252418/131050884 (Hg38)
End
132252418/131050884 (Hg38)
Orient
+
Location type
Intronic
Target gene
NEK11
Nearest miRNA
hsa-let-7g/Upstream/1778641; hsa-mir-1224/Downstream/934971;
Nearest TSS
ENST00000440867/Upstream/21175; ENST00000602792/Downstream/21451;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/23888, chr3-CpG: 53/Downstream/310850
Upstream sequence
ttgggaggctgaggcaggaggatcgcttgaacccaggaattccagaccagactgggcaacattgggagactctgtctttacaaatagtaataaatagtgg
Downstream sequence
gcatggtggcgcatgcctgcagtctgtcccagctactcggaaggctgaggtgggaggattgccttagcacctgaggtggtcaaggctgcagtgaactaga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate