Basic Information
VIS ID
TVIS44032155
Fusion event
HTLV-1-PAMR1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
p13
Reference genome
NCBI36/hg18
Start
35490551/35512427 (Hg38)
End
35490551/35512427 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11E
Target gene
PAMR1
miRNAs that regulate target gene
hsa-mir-93-3p
Nearest miRNA
hsa-mir-1343/Upstream/570507; hsa-let-7a-2/Downstream/497671;
Nearest TSS
ENST00000527297/Upstream/18153; ENST00000532914/Downstream/13170;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/92092, chr11-CpG: 197/Downstream/105654
Upstream sequence
cctccctttgaggtaggttattttcttcatttagcagataaggaaacagggtaaataaattgccccaggtaacacggctttcaggtgaaaagaaagatca
Downstream sequence
gaactcagctttttggggccaaagccttgctctttccaACACAATAATTGGTTCCTGAGAGTTCATGCCTCTGACTTTACAGTTGAAGAAGAAAgcagca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate