Basic Information
VIS ID
TVIS44032175
Fusion event
HTLV-1-LOC105371072 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr16
Cytoband
p13.2
Reference genome
NCBI36/hg18
Start
8384160/8394157 (Hg38)
End
8384160/8394157 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371072
Nearest miRNA
hsa-mir-1225/Upstream/2761591; hsa-mir-11401/Downstream/2912283;
Nearest TSS
ENST00000527434/Upstream/24293; ENST00000563037/Downstream/137856;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/740069, chr16-CpG: 21/Downstream/175540
Upstream sequence
ttatgatcataaacactgagcatgtggtctggtatagagcagaccttcagcaaatatttgtcgaatgaagaaaATGAATGACACATTGAAAGTCACTGGC
Downstream sequence
CTCATTAGCATCAATCTAAATAATTTTTAGAAAGATCTCATTCTAGTAATTGTGCTGTGATTTTTTTCTTTACCTTTGCAGAGAAACCAGTTTTGTAAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate