Basic Information
VIS ID
TVIS44032194
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q22
Reference genome
NCBI36/hg18
Start
153482312/155245897 (Hg38)
End
153482312/155245897 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-101-1/Upstream/50625; hsa-mir-1182/Downstream/100453;
Nearest TSS
ENST00000473358/Upstream/1198; ENST00000467204/Downstream/5911;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/18154, chr1-CpG: 39/Downstream/4394
Nearby gene
LOC106627981(-1035) ; FAM189B(+1308) ;
Nearest cancer related gene
FAM189B(OG, +1308) ;
Upstream sequence
tcactgaaatggtgagaatggagctaaaacctgatattaggtgatagcaccagatataggggccaagggtttcatgcttggaaaacagcaggtgcaaacg
Downstream sequence
tccttgtgctgtgaggaaatttggctggaacagaaggtgggccagattgtagctgaccatagtctctgggagtttggagatgattctaaatacaatggga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate