Basic Information
VIS ID
TVIS44032196
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q21.2
Reference genome
NCBI36/hg18
Start
148087056/149848865 (Hg38)
End
148087056/149848865 (Hg38)
Orient
+
Fragile sites / regions
FRA1F
Nearest miRNA
hsa-mir-101-1/Upstream/1460502; hsa-mir-1182/Downstream/643480;
Nearest TSS
ENST00000473358/Upstream/3049; ENST00000607355/Downstream/2196;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/5388, chr1-CpG: 288/Downstream/1469
Nearby gene
HIST2H3C(-5355) ; LOC112268238(+1327) ;
Upstream sequence
ATGCTACCTAGTCAATAACATACATTATAGGACTATGAACTACTAAGTTACACCTCATGACAAACACATGAGTAATAAAGTCTAGAAAAATACTTAAAGG
Downstream sequence
TGATGTCCATCATTCTCATTGCTGTGTTCACAGTTCACAGGTAGACCCTAAAGACAGGCTTGTGTTGtctttactgaaccctagatgcatctctcaaact
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate