Basic Information
VIS ID
TVIS44032240
Fusion event
HTLV-1-PHKA2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
p22.13
Reference genome
NCBI36/hg18
Start
18896300/18968261 (Hg38)
End
18896300/18968261 (Hg38)
Orient
+
Location type
Intronic
Target gene
PHKA2
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-149-5p
Nearest miRNA
hsa-mir-3690-1/Upstream/1542307; hsa-let-7f-2/Downstream/1048827;
Nearest TSS
ENST00000429181/Upstream/41781; ENST00000417819/Downstream/16337;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/292782, chrX-CpG: 130/Downstream/15624
Upstream sequence
gcaggaggctcacttgaggccaggagtttgagaccagccttggcaaaatagcgagaccttgtctctacaaaaaattaaaaaaattTtttttcaaaacaaa
Downstream sequence
aaagtaacaagaagaatggcagtgattaacattttaaaaaatctctttaatgtccggcttaatagaagatagctatattctcatatatgcttctgtattc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate