Basic Information
VIS ID
TVIS44032313
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
NCBI36/hg18
Start
110628685/110284540 (Hg38)
End
110628685/110284540 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-101-1/Upstream/685573; hsa-mir-11399/Downstream/2177230;
Nearest TSS
ENST00000473358/Upstream/60710; ENST00000602849/Downstream/53966;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/61150, chr1-CpG: 18/Downstream/53232
Nearby gene
KCNC4(-1891) ; RBM15-AS1(+1835) ;
Upstream sequence
taatcaaattctttaaggtcagacagcttgtatatggtataattagaaccccgatctgagtggctgcaaagatcatgctctcaactaAACTCCAGAGAGG
Downstream sequence
GATAGATTACAAGTGCAAAATCAAGATTGGTACAGATTAGACCCTCTTGCACTGTGTGTGTGATTTTCTTGCATGGTTATTAAATGTAATGTGTTGTATT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate