Basic Information
VIS ID
TVIS44032328
Fusion event
HTLV-1-LOC105372529 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr20
Cytoband
p12.2
Reference genome
NCBI36/hg18
Start
11320287/11391639 (Hg38)
End
11320287/11391639 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA20B
Target gene
LOC105372529
Nearest miRNA
hsa-mir-103a-2/Upstream/741944; hsa-mir-1-1/Downstream/7078976;
Nearest TSS
ENST00000382410/Upstream/90114; ENST00000450368/Downstream/150008;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/716676, chr20-CpG: 37/Downstream/295235
Upstream sequence
GAGATATCAGCATGAAATATGTGCCTTATGATCCAAAGAGCAAGCAGAGTAAAGAACAATCAGATTCAAagctagctggttactagagcaagtccctaac
Downstream sequence
ctctcttatactcagcttcttcctctattaaatgcatatcttggcctagGCCAGTGTTTGGTAAACAGTGACCTAAGAAGCCCTAGAGTTTTGGAAGAGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate