Basic Information
VIS ID
TVIS44032355
Fusion event
HTLV-1-LCP2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q35.1
Reference genome
NCBI36/hg18
Start
169654822/170295240 (Hg38)
End
169654822/170295240 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
LCP2
Nearest miRNA
hsa-mir-10397/Upstream/266674; hsa-mir-10523/Downstream/1091416;
Nearest TSS
ENST00000502646/Upstream/27913; ENST00000518357/Downstream/2487;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/62015, chr5-CpG: 64/Downstream/208625
Upstream sequence
tgcctctccactGCACGACCCAAGGATGTTCTCCTGCAAGTCAAAaggaattggagagattgaacaaatatgtaacatggtctctgtcctcaggagctta
Downstream sequence
tattccagACACAGGACGAGGTACCCATGTCAGAGACAAGAAGACGCAAAGTCCCACCAGTCTGCATGGGTGTCCCCAGCTAGGAGCCAGTTAATAGAGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate