Basic Information
VIS ID
TVIS44032362
Fusion event
HTLV-1-KCND2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q31.31
Reference genome
NCBI36/hg18
Start
119780592/120353302 (Hg38)
End
119780592/120353302 (Hg38)
Orient
-
Location type
Intronic
Target gene
KCND2
Nearest miRNA
hsa-mir-10525/Upstream/3332983; hsa-mir-10399/Downstream/6704786;
Nearest TSS
ENST00000635602/Upstream/79634; ENST00000473190/Downstream/387542;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/77871, chr7-CpG: 83/Downstream/503764
Upstream sequence
catctgggaaggggtgaaagtgggaattgagaccctggctgtgtgaaacagagccttcgtctctgaatattgcgccaTTTAGATTTGCTTCTTCAAAACC
Downstream sequence
TACCTACAGTAGGACAATGGAGACTGAATGGGAGGAGGAGACTAAGGAAGGAAATGAGTTATAGGGAAGTTTGTTTATGCCGCAGGCTTTTAGTAACTCA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate