Basic Information
VIS ID
TVIS44032365
Fusion event
HTLV-1-LOC111089942 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q33
Reference genome
NCBI36/hg18
Start
136679995/137344709 (Hg38)
End
136679995/137344709 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC111089942
Nearest miRNA
hsa-mir-10525/Upstream/441415; hsa-mir-10399/Downstream/779049;
Nearest TSS
ENST00000635602/Upstream/844; ENST00000418554/Downstream/9774;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/180110, chr7-CpG: 117/Downstream/501670
Upstream sequence
ACTTTTACCTTTACTGGTCAGCTTATCATTTGATGGCGTCCTTCCCAAATTGGTTGTAAAATAGACCACATTTTTCATAATTCTGAGGTTACATCCCTTC
Downstream sequence
ATTTCAATTTGACAAATATTTATTAAGCAATTTGTTTACTTAGAACTATCCTTAAATCCCCAAATTAGAAGCATTGTCTTGTGGCAAGTAGTTTTTAGGG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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