Basic Information
VIS ID
TVIS44032381
Fusion event
HTLV-1-ENDOD1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q21
Reference genome
NCBI36/hg18
Start
94465887/95093075 (Hg38)
End
94465887/95093075 (Hg38)
Orient
+
Location type
Intronic
Target gene
ENDOD1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-193b-3p ; hsa-mir-192-5p ; hsa-mir-9-5p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-5590-5p ; hsa-mir-4727-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-642a-5p ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-2276-5p ; hsa-mir-4469 ; hsa-mir-6892-3p ; hsa-mir-7705 ; hsa-mir-625-3p ; hsa-mir-6505-5p ; hsa-mir-7156-3p ; hsa-mir-4789-5p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-7153-3p ; hsa-mir-8084
Nearest miRNA
hsa-mir-10392/Upstream/626495; hsa-let-7a-2/Downstream/1248363;
Nearest TSS
ENST00000527297/Upstream/3265; ENST00000545216/Downstream/57464;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/2628, chr11-CpG: 16/Downstream/57096
Upstream sequence
TTGCCTCCAGTGATGAGTCAGGCAGGGCAGCAGTGACACTGAATTCCCAAAGCCCAGTTCGGCAGCTTTTGAGTCCACACTGCAGTTTCCCTTTGAAAAG
Downstream sequence
AATCTCCTAAGTCAAAGATCACAGAAACTTAGTCACTCTTGTGCTGAAAATCTGTAAAGTGTTGCCTGCCCAGCCCCTACAGGACAAAGTTCACACTGCA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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