Basic Information
VIS ID
TVIS44032385
Fusion event
HTLV-1-LINC00444 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
NCBI36/hg18
Start
47400551/47928415 (Hg38)
End
47400551/47928415 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC00444
Nearest miRNA
hsa-mir-2276/Upstream/3732215; hsa-mir-1267/Downstream/2068000;
Nearest TSS
ENST00000623511/Upstream/21058; ENST00000423869/Downstream/4207;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1131066, chr13-CpG: 53/Downstream/72530
Upstream sequence
CTGGGCAGTTAATAATAGCACTATCTTGTCTAAAAACGGCAAAAGCAGTATCCTGGCCAATGCCGACCTAAGGTGACAGCTTATAGTAAAATGAAAGCAA
Downstream sequence
ATTGTAAGCACAAATCTTACTCTGCATAAGTTATTTACTACCCAGATATGTATTCTTTGCTGATTAAAGGTACAGCATCAGTGAACTACTGGAGTTATTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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