Basic Information
VIS ID
TVIS44032416
Fusion event
HTLV-1-LOC105369468 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
NCBI36/hg18
Start
104876417/105500480 (Hg38)
End
104876417/105500480 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369468
Nearest miRNA
hsa-mir-10392/Upstream/1650500; hsa-let-7a-2/Downstream/5847277;
Nearest TSS
ENST00000527297/Upstream/360754; ENST00000527177/Downstream/31217;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1336150, chr11-CpG: 31/Downstream/109919
Upstream sequence
agaagtttttcatttcaataaagtccaccttatcagtttttctcatggattgtgcttttggctttgtacaaacttgtcaccaaacacaaggccaaatggg
Downstream sequence
ttttccactatgttttcttctagaagttttattgtttaacatcttatatttaggtctatcgttaggttcatgttccatttttagttaagttttgtgagat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate