Basic Information
VIS ID
TVIS44032424
Fusion event
HTLV-1-LOC339166 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr17
Cytoband
p13.2
Reference genome
NCBI36/hg18
Start
5707101/5863057 (Hg38)
End
5707101/5863057 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC339166
Nearest miRNA
hsa-mir-1253/Upstream/892907; hsa-mir-10226/Downstream/792383;
Nearest TSS
ENST00000595228/Upstream/90131; ENST00000572764/Downstream/194750;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/361775, chr17-CpG: 112/Downstream/206938
Upstream sequence
TCATGGTCATGCCGTTTGGCTGGtctttctttcttttgtttctcttttctttctctctttctttctttctttctttctttctttctttctttctttcttt
Downstream sequence
ctttctttttctttctttctttctttctttctgtctttctttctgtctttctttctttcttctctctctctctttcctttctctctCCCCTGCTctccct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate