VISDB Viral Integration Site DataBase

VIS ID

TVIS44032430

Fusion event

HTLV-1-RPH3AL integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr17

Cytoband

p13.3

Reference genome

Start

End

224868/375077 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-16-5p ; hsa-mir-3144-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-3649 ; hsa-mir-492 ; hsa-mir-6746-5p ; hsa-mir-4704-3p ; hsa-mir-544b ; hsa-mir-4733-3p ; hsa-mir-1226-3p ; hsa-mir-1911-3p ; hsa-mir-1304-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-500a-3p ; hsa-mir-6765-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6804-3p ; hsa-mir-3188 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-2467-5p ; hsa-mir-3975 ; hsa-mir-1827 ; hsa-mir-3192-5p ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-3680-5p ; hsa-mir-4798-3p ; hsa-mir-7851-3p ; hsa-mir-34b-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-5572 ; hsa-mir-3942-3p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-5100 ; hsa-mir-7704 ; hsa-mir-615-5p ; hsa-mir-6793-3p ; hsa-mir-1288-5p ; hsa-mir-1273e ; hsa-mir-219b-3p ; hsa-mir-25-5p ; hsa-mir-302f ; hsa-mir-423-3p ; hsa-mir-4329 ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-4695-5p ; hsa-mir-6087 ; hsa-mir-658 ; hsa-mir-6771-5p ; hsa-mir-6840-3p

Nearest miRNA

hsa-mir-10226/Downstream/647399;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/18201, chr17-CpG: 137/Downstream/10111

Upstream sequence

caactaccgacccaaacaacaactggggtgaatctcaacaacgtcatgccaaatgagagcgagagacgcctttcacaaaagaacacacgttgtatgatcc

Downstream sequence

catttacatgaagttccagtacaggtaaaattaacctatggtagctgggtgcagtggctcatgcctgtaatcccagcactttgagaggctgaggctggaa