Basic Information
VIS ID
TVIS44032433
Fusion event
HTLV-1-LOC107985080 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
NCBI36/hg18
Start
14224178/14380136 (Hg38)
End
14224178/14380136 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA17A
Target gene
LOC107985080
Nearest miRNA
hsa-mir-1253/Upstream/836490; hsa-mir-10226/Downstream/871491;
Nearest TSS
ENST00000595228/Upstream/5997; ENST00000455092/Downstream/345593;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/34732, chr17-CpG: 77/Downstream/880477
Upstream sequence
ATTAATGAGGTTGTCAGTGAATGTCTATCTATGTAAAGAAGAACAAAACCAGAATTTCAGGCATGTATTTTCTTGCCATTTCATGGCAAGAAGTACAATA
Downstream sequence
TCCTGGACCACGAGGATTTTAGAATCACTGACAGTTTATTGTCTTTACCCTTCCTGTAAGACTGAAGGACTCCTCATTTCCATGGCCAGTTTGGAAAAAC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate