Basic Information
VIS ID
TVIS44032434
Fusion event
HTLV-1-ARHGAP28 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
NCBI36/hg18
Start
6892820/6902821 (Hg38)
End
6892820/6902821 (Hg38)
Orient
-
Location type
Intronic
Target gene
ARHGAP28
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-196a-5p ; hsa-mir-98-5p
Nearest miRNA
hsa-mir-3976/Upstream/528396; hsa-mir-1-2/Downstream/3856763;
Nearest TSS
ENST00000575820/Upstream/6061; ENST00000584722/Downstream/24169;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/172783, chr18-CpG: 27/Downstream/17771
Upstream sequence
tgtaaaatgctacagccactgtagaaaacagtatggtaattcctcaaaacattacaaatagagttaccatatgatccaacaattccacctgtgggtacgt
Downstream sequence
ggccaaaaaattgaaagcaggggctcatggagacattttactctcatgttcacagcattattcacaatagttaaaacatggaagcatcccaagtattcat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate