Basic Information
VIS ID
TVIS44032444
Fusion event
HTLV-1-AGBL4 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
NCBI36/hg18
Start
49257655/49019396 (Hg38)
End
49257655/49019396 (Hg38)
Orient
+
Location type
Intronic
Target gene
AGBL4
Nearest miRNA
hsa-mir-12136/Upstream/4473844; hsa-mir-101-1/Downstream/2040441;
Nearest TSS
ENST00000473358/Upstream/242427; ENST00000456002/Downstream/6199;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/120155, chr1-CpG: 34/Downstream/1004349
Upstream sequence
ATAACACCTCCCTGCTCCTCTCATCCTCCCCACATGGACATCAGTAGGAGGAGGCCCCACCTCAAGGAAAGCAGTTTCTCTTCTGAAACCAGCCTGACCC
Downstream sequence
ATAGCCAGCATAAATGAGATGTTGTTTTGGCATTTCTTCTTCAGGTCAATGTAATCAGTGTAGAAAATGTAAATGAATAATTTAGGTTTCCAGAAATAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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