Basic Information
VIS ID
TVIS44032471
Fusion event
HTLV-1-LOC100132543 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
p11.21
Reference genome
NCBI36/hg18
Start
31999494/31955293 (Hg38)
End
31999494/31955293 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC100132543
Nearest miRNA
hsa-mir-1244-3/Upstream/6081214; hsa-let-7i/Downstream/10368407;
Nearest TSS
ENST00000382841/Upstream/68090; ENST00000535606/Downstream/4077;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/162997, chr12-CpG: 80/Downstream/3934
Upstream sequence
CATGATAATCTATCCAAGATCATTAGGACAAGCAGTGGAGCCAGCCAGATGATGGCATGTGCCATTAATAAGGTGCTGATGGGAAGGGTGCCTGACAGGG
Downstream sequence
GAGGCTGGCCAAATGAAATTGAACCACCACCCTCTGAAATGCCCCCTTGGCAAAAGAGACAAGAAGGCAgtggcggaaggggtggttggggtggtggttg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate