Basic Information
VIS ID
TVIS44032475
Fusion event
HTLV-1-CCDC91 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
p11.22
Reference genome
NCBI36/hg18
Start
28424208/28380008 (Hg38)
End
28424208/28380008 (Hg38)
Orient
+
Location type
Intronic
Target gene
CCDC91
miRNAs that regulate target gene
hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-5689
Nearest miRNA
hsa-mir-1244-3/Upstream/2505929; hsa-let-7i/Downstream/13943692;
Nearest TSS
ENST00000382841/Upstream/77374; ENST00000535212/Downstream/70390;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/189034, chr12-CpG: 91/Downstream/769034
Upstream sequence
gtcagtgatttagttagtaacttaacccagtgatagactggattaagaaaatgtggcacatatacacaatggaatactatgcagccataaaaaaggatga
Downstream sequence
gttcatgcctttgcagggacgtggatgaagctggaaaccatcattctcagcaaactatcacaaggacagaaaaccaaacaccgcatgttttcactcatag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate