Basic Information
VIS ID
TVIS44032494
Fusion event
HTLV-1-GTF2IP5 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q11.21
Reference genome
NCBI36/hg18
Start
64899332/65796910 (Hg38)
End
64899332/65796910 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7J
Target gene
GTF2IP5
Nearest miRNA
hsa-mir-1183/Upstream/1117734; hsa-mir-10399/Downstream/1317412;
Nearest TSS
ENST00000635602/Upstream/333839; ENST00000434382/Downstream/76357;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/26017, chr7-CpG: 108/Downstream/76109
Upstream sequence
ATGGAGTAAGAAGCACTGCAATTAAATcaggggtcggcaaactctgtggcccatgggtcaaatctagcctgatgcctttttttatgaataaaccatattg
Downstream sequence
gaacacagtctcacccatgggtttacatattgtccatggctgtttttaatgttacaagagcagagttgagtagtttcaacagagaacatatggcccagaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate