Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene54054630538518085395930353942996539470255390438953907346539389415393909053953219
Basic Information
VIS ID
TVIS44032496
Fusion event
HTLV-1-RGS20 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
q11.23
Reference genome
NCBI36/hg18
Start
55028332/53953219 (Hg38)
End
55028332/53953219 (Hg38)
Orient
+
Location type
Intronic
Target gene
RGS20
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-124-1/Upstream/11056944; hsa-mir-10400/Downstream/7761569;
Nearest TSS
ENST00000518652/Upstream/7894; ENST00000519831/Downstream/68710;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/70638, chr8-CpG: 78/Downstream/68549
Upstream sequence
ccattgatggctacactaaaaacacaggcttcaccactgtgcaatatatccatgtaacaaaagtgcacttgcaccccctaaTTATAGTTTTTAAATGTTT
Downstream sequence
ATAAGTTTTTTATAAAGTGagccagacgcagtggctcacacttgtaatcccagcactctgggaggccaaggtgggcagatcgcttgagcccaagagtttg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate