Basic Information
VIS ID
TVIS44032506
Fusion event
HTLV-1-LOC105375287 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
p11.2
Reference genome
NCBI36/hg18
Start
55612517/55577330 (Hg38)
End
55612517/55577330 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7A
Target gene
LOC105375287
Nearest miRNA
hsa-mir-1183/Upstream/10695530; hsa-mir-10399/Downstream/1378455;
Nearest TSS
ENST00000635602/Upstream/4159; ENST00000421500/Downstream/14744;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/4424, chr7-CpG: 20/Downstream/163689
Upstream sequence
cacaatgtgcaggtttgttacatatgtatacatgtgccacgttggtgtgctgtgcccattaaatcgtcatttacattacatatatctcctaatgctatcc
Downstream sequence
ctccccgctccccccaccccacgacaggccccaatgtgtgatgttccccaccctgtgtccaagtgttctcattgttcaatttccacctgtgagtgagaac
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate