Basic Information
VIS ID
TVIS44032516
Fusion event
HTLV-1-LOC101929095 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p15.32
Reference genome
NCBI36/hg18
Start
14848616/15237894 (Hg38)
End
14848616/15237894 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LOC101929095
Nearest miRNA
hsa-mir-12113/Upstream/1609937; hsa-mir-12115/Downstream/5290381;
Nearest TSS
ENST00000502981/Upstream/9934; ENST00000510958/Downstream/101924;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/232757, chr4-CpG: 145/Downstream/416847
Upstream sequence
AGGCAGTGACCAGGAGAAGCCAGGGAATTCTGCCATGAACATTAATTTCCTCTATTCTCTGAATGTTCATTTCATTGAGCACCTTCAGCATGCCAGTTTC
Downstream sequence
CATGTTGGAGAGTACAATGATGAGGGAAACTCCATCCCTGCCTGCAAGTTGGAAATGCTTGTGGGTGGACACTGGCCACGTGGTGTGTGGGTAGGCTTGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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