Basic Information
VIS ID
TVIS44032520
Fusion event
HTLV-1-AFG3L2P1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
p11.1
Reference genome
NCBI36/hg18
Start
43242251/43267951 (Hg38)
End
43242251/43267951 (Hg38)
Orient
-
Location type
Intronic
Target gene
AFG3L2P1
Nearest miRNA
hsa-mir-124-1/Upstream/371676; hsa-mir-10400/Downstream/18446837;
Nearest TSS
ENST00000518652/Upstream/71783; ENST00000518278/Downstream/3554286;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/20552, chr8-CpG: 23/Downstream/3893
Upstream sequence
acaggcattcactaccatgtctggctgacctttccatttgtagcagagatgtgtttcgccgtgccggccaggctggcctcaaactcctaaccttaagtga
Downstream sequence
tccacctgcctcgaccccgcaaattgctgggaccacaggcgtgagccactgcaccctgccccattttacattcctatcaacatgtgagcgtttcaactgc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate