Basic Information
VIS ID
TVIS44032557
Fusion event
HTLV-1-LOC105376456 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
NCBI36/hg18
Start
25101251/24772316 (Hg38)
End
25101251/24772316 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376456
Nearest miRNA
hsa-mir-1265/Upstream/496535; hsa-mir-107/Downstream/3516942;
Nearest TSS
ENST00000439456/Upstream/48648; ENST00000610158/Downstream/180268;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/47429, chr10-CpG: 72/Downstream/179865
Upstream sequence
ataataataattaataaaaataaaaatttattttataaataGATGCCTTTTTTTTTCAAAAGAAAACAAGGACAATTTTAAGAGCATTTCCATGGATATT
Downstream sequence
CCCTTTTCCCTTGCCAAAAAGTAATGAGACAAGCCTACAGGCTCAGTTCCATTTTGGTCAAATTGCAAATATGTGACATTTTAGGAATCTTGGGCTGTTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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