VISDB Viral Integration Site DataBase

VIS ID

TVIS44032560

Fusion event

HTLV-1-INTS7 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr1

Cytoband

q32.3

Reference genome

Start

End

210188282/211948317 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-26b-5p ; hsa-let-7b-5p ; hsa-mir-4762-3p ; hsa-mir-4303 ; hsa-mir-4682 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-4715-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-566 ; hsa-mir-6720-3p ; hsa-mir-4763-5p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4438 ; hsa-mir-4668-5p ; hsa-mir-6832-3p ; hsa-mir-3529-3p ; hsa-mir-6516-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-455-3p ; hsa-mir-4451 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-661 ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-5186 ; hsa-mir-3192-5p ; hsa-mir-1203 ; hsa-mir-181d-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-1261 ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-6801-5p ; hsa-mir-150-5p ; hsa-mir-490-5p ; hsa-mir-589-3p ; hsa-mir-7153-3p

Nearest miRNA

hsa-mir-101-1/Upstream/2324807; hsa-mir-1182/Downstream/129296;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/117379, chr1-CpG: 47/Downstream/87178

Nearest cancer related gene

INTS7(OG, No orient, 0)

Upstream sequence

TTGGGTTCAGGCAATTGAACATTTTGTGCCCAACAGACTCATAGTACAAATGCCAAGTCTATTACCTGAGATAATCACAACACAGATTTAAAGACACTGG

Downstream sequence

TTCTATTTTTTCAGATTTAACTGTTAAAATAGCATTAATCAGCTTCCTGCAACAAGTAATTTGGAAAGTATTTGCAGAGACATCCACCTTTGGTGGACCT